Clinical concept normalization

This task requires to return all tumor morphology entity mentions found in medical documents together with their corresponding eCIE-O codes, i.e. finding and normalizing tumor morphology mentions.

Publication
Antonio Miranda-Escalada, Eulàlia Farré and Martin Krallinger (2020) Named Entity Recognition, Concept Normalization and Clinical Coding: Overview of the Cantemist Track for Cancer Text Mining in Spanish, Corpus, Guidelines, Methods and Results. Proceedings of the Iberian Languages Evaluation Forum (IberLEF 2020).
Competition
CANcer TExt Mining Shared Task – tumor named entity recognition
NLP topic
(named) entity recognition
Abstract task
Classification
Dataset
CANTEMIST
Year
2020
Publication link
http://ceur-ws.org/Vol-2664/c…
Ranking metric
Micro F

Task results

System MicroPrecision MicroRecall MicroF1
HITSZ-ICRC 0.8240 0.8260 0.8250
Vicomtech 0.8220 0.8210 0.8210
Fadi 0.7980 0.7740 0.7860
mhjabreel 0.7750 0.7790 0.7770
NLNDE 0.7670 0.7660 0.7670

If you have published a result better than those on the list, send a message to odesia-comunicacion@lsi.uned.es indicating the result and the DOI of the article, along with a copy of it if it is not published openly.